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I’m frustrated

Nero Recode 2014 2nd video clip no audio after combined

Just purchased Recode 2014 to transcode my home videos (MTS) to MP4 so I can play them on Roku 3. Transcoding individual videos works flawlessly, but when I chose "combine videos into one file" for 2 clips, the output video has audio only for the 1st clip and not the 2nd clip.
My original videos are MTS(H.264/MPEG-4 AVC with AC3), and the outputs are MP4(AVC/H.264 with LC-ACC).
Anyone out there have successful experience transcode and join multiple MTS video files to any Roku 3 supported format?
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